6."3 Libras" 3:39
7."Sleeping Beauty"(Extended Intro 5:02 LP) 4:10
8."Thomas" 3:29
9."Renholder" 2:24
10."Thinking of You" 4:34
11."Brena" 4:24
12."Over" 2:21
13."Orestes" (Demo) (Japanese Import Bonus Track) 3:24
2003 - Thirteenth Step
1."The Package" 7:40
2."Weak and Powerless" 3:15
3."The Noose" 4:53
4."Blue" 4:13
5."Vanishing" 4:51
6."A Stranger" 3:12
7."The Outsider" 4:06
8."Crimes" (Howerdel/Keenan/Freese/White) 2:34
9."The Nurse Who Loved Me" (Edwards/Andrews) 4:04
10."Pet" 4:34
11."Lullaby" 2:01
12."Gravity" (Howerdel/Keenan/Freese/Van Leeuwen/Lenchantin) 5:08
2004 - Emotive
1."Annihilation" (Crucifix) 2:13
2."Imagine" (John Lennon) 4:48
3."Peace, Love, and Understanding" (Nick Lowe; Elvis Costello) 5:03
4."What's Going On" (Marvin Gaye) 4:53
5."Passive" (Tapeworm) 4:09
6."Gimmie Gimmie Gimmie" (Black Flag) 2:18
7."People Are People" (Depeche Mode) 3:43
8."Freedom of Choice" (Devo) 2:59
9."Let's Have a War" (Fear) 3:28
10."Counting Bodies Like Sheep to the Rhythm of the War Drums" 5:36
11."When the Levee Breaks" (Memphis Minnie and Kansas Joe McCoy; Led Zeppelin) 5:55
12."Fiddle and the Drum" (Joni Mitchell) 3:06
2004 - Amotion Bonus CD
1 Judith (Renholder Mix) Stereo 4:24
2 3 Libras (Feel My Ice Dub Mix) Stereo 4:28b
3 The Outsider (Apocalypse Mix) Stereo 5:28
4 Weak And Powerless (Tilling My Grave Mix) Stereo 3:05
5 The Outsider (Frosted Yogurt Mix) Stereo 4:07
6 Blue (Bird Shake Mix) Stereo 3:57
7 3 Libras (All Main Courses Mix) Stereo 7:17
8 The Hollow (Constantly Consuming Mix) Stereo 3:40
9 The Hollow (The Bunk Mix)
2009 - Deep Cuts
1. Sleeping Beauty (Acoustic) (Live In Philly)
2. Magdalena (Live)
3. Brena (Live)
4. Orestes (Demo)